- Geistliche Lieder (12), Op. 137 (1)
- Gesänge (5), Op. 98 (1)
- Gesänge (10), Op. 83 (1)
- Gesänge (15), Op. 55 (1)
- Gesänge (16), Op. 62 (1)
- Gesänge (18), Op. 75 (1)
- Introduction, Passacaglia and Fugue in E minor, Op. 127 (4)
- Introduction, Variations and Fugue on an Original Theme in F sharp minor, Op. 73 (4)
- Introduction and Passacaglia in D minor, WoO IV/6 (4)
- Komm, süßer Tod, WoO IV/3 (3)
- Little Chorale Preludes (30), Op.135a (5)
- Lyrisches Andante, WoO III/7 'Liebestraum' (2)
- Monologues (12), Op. 63 (7)
- Neue Kinderlieder (5), Op. 142 (1)
- O Haupt voll Blut und Wunden, WoO IV/13 (3)
- O Traurigkeit, o Herzeleid, WoO IV/2 (3)
- Organ Sonata No. 1 in F sharp minor, Op. 33 (3)
- Organ Sonata No. 2 in D minor, Op. 60 (6)
- Pieces (3), Op. 7 (3)
- Pieces (7), Op. 145 (4)
- Pieces (9), Op. 129 (3)
- Pieces (10), Op. 69 (4)
- Pieces (12), Op. 59 (7)
- Pieces (12), Op. 65 (6)
- Pieces (12), Op. 80 (7)
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